Table Info

Table 2.

Table showing the gene fusions and exon skipping called by ADx in samples investigated by lung panel

Samples	Histology/Diagnosis*	Lung panel ADx	FISH
32	Aggressive glial neoplasia^a	KIF5C-ALK	ALK confirmed
33	Poorly differentiated lung adenocarcinoma	EML4-ALK	ALK confirmed
34	Lung adenocarcinoma^a	KIF5B-RET	RET confirmed^b
35	Thyroid papillary carcinoma	RET-NCOA4	RET confirmed
36	Thyroid papillary carcinoma	RELCH-RET	RET confirmed
37	NTRK-rearranged spindle cell sarcoma	TPM3-NTRK1	NTRK1 confirmed^b
38	Liver adenocarcinoma^a	FGFR2-TACC3	FGFR2 non canonical
39	Secretory carcinoma of the parotid	ETV6-NTRK3	ETV6-NTRK3 confirmed
40	Non small cell carcinoma with sarcomatoid features	TPM3-NTRK1	NTRK1 not confirmed
41	Pilocytic astrocitoma^a	KIAA1549-BRAF	Not done
42	Intracranic astrocitoma^a	KIAA1549-BRAF	Not done
43	Lung adenocarcinoma	EML4-ALK	Not done
44	Thyroid papillary carcinoma^a	TPR-NTRK1	Not done
45	Lung adenocarcinoma	EML4-ALK	Not done
46	Lung adenocarcinoma	EML4-ALK	Not done
47	NTRK rearranged inflammatory myofibroblastic tumor	ETV6-NTRK3	Not done
48	NTRK rearranged Spindle cell Sarcoma	TPM3-NTRK1	Not done
49	NTRK rearranged Spindle cell Sarcoma	TPM3-NTRK1	Not done
50	NTRK rearranged Spindle cell Sarcoma	TPR-NTRK1	Not done
51	Parotid carcinoma^a	ETV6-NTRK3	Not done
52	NTRK rearranged spindle cell neoplasm	TFG-NTRK3	Not done
53	Talamic neoformation	NTRK2 exon5 skipping	Not achievable
54	Embryonal rhabdomyosarcoma	NTRK2 exon 5 skipping	Not achievable
55	Cerebellar HGNET-BCOR mutated^a	NTRK3 exons 13–15 skipping	Not achievable
56	Frontal expansive lesion^a	NTRK3 exon 16 skipping	Not achievable
57	Lung adenocarcinoma	MET exon 14 skipping	Not achievable
58	Lung adenocarcinoma	MET exon 14 skipping	Not achievable
59	Lung adenocarcinoma	MET exon 14 skipping	Not achievable
60	Neuroendocrine tumor (atypical carcinoid)	RET exons 4–7 skipping	Not achievable

a: external diagnosis. b: RNAseq was performed on surgical samples while FISH was done on CNBs prior surgery. *: According to WHO classification of Soft tissue and bone tumors [17] and to WHO classification of Thoracic tumors [22]; KIF5C: kinesin family member 5C; EML4: EMAP like 4; RELCH: RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing; TPM3: tropomyosin 3; TACC3: transforming acidic coiled-coil containing protein 3; TPR: translocated promoter region, nuclear basket protein

Supplementary materials

The supplementary materials for this article are available at: https://www.explorationpub.com/uploads/Article/file/1002102_sup_1.pdf.

Declarations

Author contributions

FB: Writing – original draft; IC, EC, AB, GD, MAT, VM, MD, CP, SD, AV, PC, and DL: Investigation; LA, PV, and AD: Software and Formal analysis; AP, IC, FB: Data curation; IC, FB, GD, FP, ET, PC, DL, AV, LA, and GP: Writing – review & editing. GP: Supervision. All the authors read and approved the submitted version.

Conflicts of interest

The authors declare that they have no conflicts of interest.

Ethical approval

This study was performed according with the Declaration of Helsinki and approved by the Ethics committee of Fondazione IRCCS Istituto Nazionale Tumori Milano (INT 277/20).

Consent to participate

Written informed consent to participate in the study was obtained from all participants.

Consent to publication

Not applicable.

Availability of data and materials

The raw data supporting the conclusions of this manuscript will be made available by the authors (luca.agnelli@istitutotumori.mi.it), without undue reservation, to any qualified researcher.

Funding

Not applicable.

Copyright

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