Database search engines and algorithms in database search engines used for identification of MHC binding peptides (pMHC) and post-translational modification (PTM) of identified peptides
Search engines
DB search
De novo peptide sequencing
PTM search*
Proteome Discoverer
SEQUEST
INFERY™
ProsightPD
Maxquant
Andromeda
MaxNovo
Andromeda
PEAKS
PEAKS
PEAKS BD
GlycanFinder
MSFragger
MSFragger
n/a
MSFragger-glyco
MetaMorpheus
MetaMorpheus
n/a
G-PTM-D
PepNoVo+
n/a
PepNOVO+
n/a
SMSnet
SMSnet
SMSnet
SMSnet
* Database search for PTM can be phosphorylation, glycosylation, or other type of PTM
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