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Table 3

From: Regulatory RNAs: role as scaffolds assembling protein complexes and their epigenetic deregulation

Table 3. Gene activation by lncRNAs through euchromatin regulation and histone marks

Gene	Interaction	Target	Histone mark	Reference
GClnc1	WDR5, KAT2A	SOD2 promoter	H3K4me3, H3K9ac	[84, 88]
GCAWKR	WDR5, KAT2A	PTP4A1	H3K4me3, H3K9ac	[85]
TM4SF19-AS1	WDR5	TM4SF19	H3K4me3	[84]
LincRNA-P21	hnRNPK	P21	H3K4me3, H3K9ac	[89]
Gm29348	-	-	H3K4me3, H3K9ac	[90]
TARID	GADD45A	TCF21	CpG	[105]
lncPRESS1	SIRT6	Embryogenesis	H3K56ac, H3K9ac	[106]
HOTTIP	WDR5	HOXA	H3K4me3	[107–109]
CCAT1-L, PVT1	CTCF, hnRNPK	MYC	Chromatin loop, NUP153 binding to cohesin	[110]
NRIP enhancer	Cohesin	ER dependent genes	Chromatin loop nuclear receptor interacting protein	[111, 112]
CHASERR	CHD2	CHD2 regulated promoters	Binding to nascent RNA	[44, 113]
HASTER	-	HNF1A	Promoter enhancer interaction	[114]
NEAT1_2	RBP14	Euchromatin binding	Paraspeckle condensates	[115]
THRIL	hnRNPs	TNF-α	Promoter/enhancer activation	[44, 101]
HOTAIR	LSD1	HBXIP-MYC dimer MYC target genes	Lysine demethylation	[44]
NeST	WDR5	IFN-gamma	H3K4me	[116]
Lnc13	hnRNPD	Suppress Inflammatory genes by chromatin access	Celiac disease	[12]

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CCAT1-L: Colon cancer associated transcript 1-long; PVT1: plasmacytoma variant translocation 1; CHASERR: CHD2 adjacent suppressive regulatory RNA; MYC: viral myelocytomatosis homolog; LSD1: lysine-specific demethylase 1; NEAT1: nuclear enriched abundant transcript 1; GADD45A: growth arrest and DNA-damage-inducible alpha; CTCF: CCCTC-binding factor; CHD2: chromodomain-helicase DNA binding protein 2; -: blank cell

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PP: Writing—review and editing.

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The author declares that he has no conflicts of interest.

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