Colorectal cancer cell lines with or without APC and other WNT/β-catenin pathway mutations
Cell line
DepMap ID
TMB
FGA
Ploidy
MSI status
Quadruple mutated
CL-34
ACH-000895
42.73333
0.149
1.98
NA
CW-2
ACH-000998
274.9667
0.0293
2
MSI
GP2d
ACH-000982
169.2
0.0418
2
NA
HCT-15
ACH-000997
259.6667
0.0269
2
MSI
KM12
ACH-000969
110.7
0.1304
2
MSI
LoVo
ACH-000950
77.5
0.2092
2.2
MSI
LS411N
ACH-000985
182.0667
0.2807
3.41
MSI
NCI-H630
ACH-002287
75.4
NA
NA
NA
SNU-C2A
ACH-000967
104.1667
0.1034
1.98
NA
SNU-C4
ACH-000959
73.46667
0.0337
1.99
NA
SNU-C5
ACH-000970
100.0333
0.0966
2.05
MSI
APC only mutated
C75
ACH-001458
8.333333
NA
NA
NA
C80
ACH-001459
7.133333
NA
NA
NA
C84
ACH-001460
7.566667
NA
NA
NA
CACO2
ACH-000003
5.6
NA
NA
NA
COLO 201
ACH-000253
8.866667
0.38
2.96
MSS
DiFi
ACH-002233
7.2
NA
NA
MSS
GEO
ACH-002394
11.13333
NA
NA
MSS
HCC2998
ACH-001081
233.4333
NA
NA
MSS
MDST8
ACH-000935
25.86667
0.5583
2.12
MSS
SK-CO-1
ACH-000400
9.9
0.552
3.68
MSS
SNU-175
ACH-000989
183.8667
0.0927
2.05
MSI
SW1116
ACH-000489
12.03333
0.6339
2.76
MSS
SW1417
ACH-000236
8.5
0.5683
3.12
MSS
Triple mutated
HCC-56
ACH-000467
12.96667
0.5288
2.94
NA
HCT 116
ACH-000971
106.5
0.082
2.06
MSI
LIM1215
ACH-001546
30.36667
NA
1.97
MSI
LS1034
ACH-000252
12.4
0.3562
3.11
MSS
NCI-H508
ACH-000360
10.73333
0.4813
2.31
MSS
NCI-H716
ACH-000491
14.1
0.6137
2.83
MSS
RKO
ACH-000943
114.6667
0.1421
2.15
MSI
SNU-407
ACH-000955
88.33333
0.0895
2.08
MSI
SNU-C2B
ACH-001199
86.2
NA
2.02
MSI
Quadruple wild type
C10
ACH-001454
7.233333
NA
NA
NA
C99
ACH-001461
6.9
NA
NA
NA
CAR1
ACH-002345
7.833333
NA
2.77
MSS
LS513
ACH-000007
13.9
0.2636
2.28
MSS
TMB: tumor mutation burden; FGA: fraction genome altered; MSI: microsatellite instability; MSS: microsatellite stability; NA: not available; APC: adenomatous polyposis coli. Data are from the Cancer Cell Line Encyclopedia (CCLE)
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