Table Info

Table 5.

Alterations of frequently mutated genes of colorectal cancer in colorectal cancer cell lines with or without APC and other WNT/β-catenin pathway mutations

Cell line	*TP53*	*KRAS*	*NRAS*	*BRAF*	*PIK3CA*	*APC*	*RNF43*	*CTNNB1*	*TCF7L2*
Quadruple mutated
CL-34	S127P, K382Nfs*40	WT	WT	*V600E	WT	T1556Nfs3, E418, R856C	WT	WT	K468Sfs23, L200I
CW-2	WT	P140H	WT	WT	P283S	S1465Wfs3, R302, G470R, A528V, E2737G, I2756V	WT	R582Q	C469Vfs8
GP2d	WT	*G12D	WT	T529A	*H1047L	T1445Lfs27, L2384I, S2562G, HD	S771T, D628G	D755V	W156
HCT-15	S241F, X367_splice	*G13D	WT	WT	E545K, D549N	I1417Lfs2, R2166, R727M, K993N, K1561N, E2550Q, I1779M	G659Vfs41, L214M	WT	WT
KM12	H179R, V73Wfs*50	WT	WT	A712T, A404Cfs*9	WT	N1818Kfs2, G471E	G659Vfs41	SETD5 fusion	WT
LoVo	WT	*G13D	WT	WT	WT	R1114, M1431Cfs42, R2816Q	WT	*R535Q	K468Sfs23
LS411N	Y126	WT	WT	*V600E	WT	T1556Nfs3, Q789	G659Vfs41	WT	WT
NCI-H630	R342	WT	WT	WT	WT	Q1367, V1173M	WT	WT	K468Sfs23
SNU-C2A	R273C, R273H, *R273Y	*G12D	HD	WT	D725G	K2051Efs9	R337, C275Wfs*143, R389C	HD	K468Sfs23
SNU-C4	*G245S	WT	HD	D22N	*E545G, V71I	F801Lfs19, T1556Lfs9, H325R	R225Afs194	WT	K468Sfs23
SNU-C5	R248W, V218L	WT	WT	*V600E	*H1047R	N1792Kfs7	G659Vfs41	WT	WT
APC only mutated
C75	*R249S	WT	WT	WT	WT	Q1204, S943Qfs12, L1488Ffs23	WT	WT	WT
C80	Q52	*A146V	WT	WT	WT	L629	WT	WT	WT
C84	R342	*G12A	WT	WT	WT	R1450, R283, *R640W	WT	WT	WT
CACO2	C135F, E204*	WT	WT	WT	WT	Q1367	WT	G245A	WT
COLO 201	WT	WT	WT	*V600E	WT	T1556Nfs3	WT	WT	WT
DiFi	*K132R	WT	WT	WT	WT	E1151, E443Afs16	WT	WT	WT
GEO	WT	*G12A	WT	WT	WT	E1536, C344Vfs110	WT	WT	WT
HCC2998	R213	*A146T	WT	WT	WT	R1450, L665, I2167S, S1864Y, N2720K, R168I	WT	WT	WT
MDST8	WT	WT	WT	V600E, V600K, *V600M	WT	T1556Nfs3	WT	WT	WT
SK-CO-1	WT	*G12V, AMPL	WT	AMPL	WT	F1089fs37	WT	WT	WT
SNU-175	WT	*A59T	WT	NA	NA	R232, N1455fs18, G1499, A199V	WT	WT	WT
SW1116	*A159D	*G12A	WT	NA	AMPL	Q264, Q1429Hfs41	WT	WT	WT
SW1417	C238Hfs21	WT	WT	*V600E, AMPL	NA	R1450	WT	WT	WT
Triple mutated
HCC-56	*R196P	*G12V	WT	WT	WT	WT	WT	WT	*X387_splice
HCT 116	WT	*G13D	WT	WT	*H1047R	WT	R117Afs41	*S45del	Fusion
LIM1215	WT	WT	WT	WT	WT	WT	WT	*T41A, Q177P	NA
LS1034	*G245S, HD	*A146T, AMPL	WT	WT	WT	WT	WT	WT	R39Gfs4
NCI-H508	*R273H	WT	WT	*G596R	*E545K, AMPL	WT	WT	WT	Fusion, HD
NCI-H716	*E224D	R97I	WT	WT	WT	WT	H472Qfs30	WT	WT
RKO	WT	WT	WT	*V600E	*H1047R	WT	G659Vfs41, H549N	WT	WT
SNU-407	S90Pfs33	*G12D	WT	R726C	*H1047R	WT	WT	*T41A	K468Sfs23, A549T, A419V
SNU-C2B	*R273Y	*G12D	WT	WT	D725G	WT	C275Wfs143	WT	K468Sfs23
Quadruple wild type
C10	WT	WT	WT	WT	WT	WT	WT	WT	WT
C99	WT	WT	WT	WT	WT	WT	WT	WT	WT
CAR1	*V272M	WT	WT	WT	WT	WT	WT	WT	WT
LS513	WT	*G12D	WT	E204L, E204V, E204*	WT	WT	WT	WT	WT

AMPL: amplified; HD: Homodeleted; WT: wild type; NA: not available; APC: adenomatous polyposis coli. * before a mutation denotes oncogenic. Data are from the Cancer Cell Line Encyclopedia (CCLE)

Declarations

Author contributions

IAV: Conceptualization, Investigation, Writing—original draft, Writing—review & editing.

Conflicts of interest

The author declares that there have no conflicts of interest.

Ethical approval

The study was an analysis of previously published data and was exempt from approval by an Ethics Committee.

Consent to participate

The study was an analysis of previously published data and informed consent was not required or obtained.

Consent to publication

Not applicable.

Availability of data and materials

The datasets analyzed for this study can be found in the Cancer Genome Atlas [http://www.cancer.gov/ccg/]; Cancer Cell Line Encyclopedia [http://www.sites.broadintitute.org/ccle/]; Genomics of Drug Sensitivity in Cancer (GDSC) project [http://www.cancerrxgene.org]; project Achilles, Drive, Marcotte DEMETER2 [http://www.depmap.org/portal/achilles]; DepMap, Public 24Q2+Score, and Chronos projects [http://www.depmap.org].

Funding

Not applicable.

Copyright

Publisher’s note

Open Exploration maintains a neutral stance on jurisdictional claims in published institutional affiliations and maps. All opinions expressed in this article are the personal views of the author(s) and do not represent the stance of the editorial team or the publisher.

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